Flatiron institute. theflatironinstitute.

Flatiron institute These curated, high-level scientific talks feature leading scientists and mathematicians and are intended to foster discourse and drive discovery among the broader NYC-area research The NeuroRSE group at Flatiron Institute Center for Computational Neuroscience builds and maintains open source software for computational and systems neuroscience. The Github repository is located Luke Evans. in Astrophysics from Princeton University, where I was advised by Matthew Kunz. If you anticipate extensive collaboration with researchers in one of these centers, please indicate this in your research statement. Chen’s research focuses on developing algorithms for processing and statistical analysis of heterogeneous genomics data. His research lies in the field of numerical analysis and scientific computing with DeepSEA analysis DeepSEA is a deep learning framework that predicts genomic variant effects on a wide range of regulatory features with single nucleotide sensitivity: transcription factors binding, DNase I hypersensitive sites, and histone marks in multiple human cell types. Analytic continuation with TRIQS 5. For each simulation, we release 19 snapshots across z = 1 - 10. I'm a Flatiron Research Fellow in the Center for Computational Quantum Physics at the Flatiron Institute interested in strong electronic correlations and their effects on materials properties. The lectures feature leading scientists and mathematicians and cover various themes such as NeuroRSE is a group of researchers and software developers who create open source tools for computational and systems neuroscience. It is extremely fast (typically achieving \(10^6\) to \(10^8\) points per second on a CPU, (Flatiron Institute, Simons Foundation, NY, USA) I was previously a Dunlap Fellow at the Dunlap Institute for Astronomy & Astrophysics (University of Toronto, Ontario, Canada) I previously worked for the European Space Agency's Gaia mission Data Processing and The Simons Sessions I: jazz performance with Stephon Alexander (sax), Will Calhoun (percussion), Santi Debriano (bass), Mark Whitfield (guitar), followed by discussion of music and math, on roof of Flatiron Institute, NYC. 7 Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) Prior to joining Flatiron Institute, I held a postdoctoral fellowship at Harvard’s John A. David Stein, Ph. A(k,ω) 0 2 4 6 −1 0 1 2 3 4 © Open Learning At Flatiron. Read More Understanding the human brain is one of the greatest and most challenging scientific frontiers of our time. A second cluster with 41,000 cores, 128 GPUs and 16 petabytes of raw storage is located at and co Fulltime Flatiron Institute Analysts, Research Fellows, Scientists, and Engineers: An account is automatically created for you when you start your term. He is interested in leveraging systematic downfolding techniques to better understand correlated electron systems and the extent to which different simplified models may describe them. AGORA FIRE Gaia DR2 Gaia DR3 Illustris IllustrisTNG EAGLE CAMELS CANDELS SC-SAM Center for Computational Astrophysics. Research Scientist Center for Computational Mathematics Flatiron Institute Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) About. TRIQS/solid_dmft: full DFT+DMFT wrapper 3. Features: call for The Simons Foundation’s mission is to advance the frontiers of research in mathematics and the basic sciences. All storage is regularly purged. We strongly recommend enabling HTTPS for JupyterHub. Links Flatiron Institute Princeton University Carnegie Mellon University The Flatiron Institute, an internal research division of the Simons Foundation, is a community of scientists who are working to use modern computational tools to advance our understanding of science, both through the analysis of large, rich Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine. I am a research scientist at the Flatiron Institute Center for Computational Quantum Physics (CCQ) where I develop and apply tensor network computational methods, primarily for quantum many-body systems. The file format is as follows: Top Edges: the network is filtered to only include edges with evidence supporting a tissue-specific functional interaction [entrez gene id 1][entrez gene id 2][posterior prob. This workshop is built upon the vibrant scientific activities centered on the usage and development of the Athena++/AthenaK MHD codes for In Silico Mutagenesis analysis Perform “In silico saturated mutagenesis” analysis to discover informative regulatory features within any sequence. Flatiron Institute lgarrison@flatironinstitute. For each simulation, we release 19 snapshots SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. About Me. It is a project of the Center for Computational Mathematics at the Flatiron Institute. Michał Tomza (Faculty of Physics, University of Warsaw, Poland) and Prof. October 23, 2020 Launch day. November 2014–August 2015; January–March 2016; January–May 2017 Flatiron Institute (formerly SCDA), Simons Foundation, New York, NY Andrew Millis is co-director of the Center for Computational Quantum Physics at the Flatiron Institute and professor of physics at Columbia University. Shiwei received his Ph. 0 license Activity. Read More Center for Computational Quantum Physics (CCQ)/9/10-Flatiron Institute 162 5th Avenue. We provide a means of mining tens of thousands of whole-genome experiments by Research Scientist and Project Leader, CCM joint with CCB, Flatiron Institute Email Pilar Cossio. I received my Ph. Ruben Ohana, Ph. Flatiron Institute 162 Fifth Avenue New York, NY 10010 United States Phone (+1)646-876-5948 Email rc3660[at]columbia. Read more Sophie Dinah Beck, Ph. He’s a theoretical high-energy astrophysicist who combines GRMHD simulations with analytic calculations Chi-Ning is a Flatiron Research Fellow in Professor SueYeon Chung group at the Flatiron Institute. Welcome to the Flatiron Institute Wiki . Throughout the summer, I felt Flatiron’s deep commitment to a collaborative team culture and active mentorship through abundant intern face time with the CEO, CTO, and leadership at every level. TRIQS/DFTTools: connection to ab initio codes 2. In addition, please make sure that you abide by the workshop Collaboration Policy by extending co-authorship to any workshop participant who contributed significantly. Senior Research Scientist/Group Leader Center for Computational Quantum Physics (CCQ) Flatiron Institute Fast Multipole Libraries. and takes its name from the Flatiron District in New York City where it is based. Angel Rubio will spend part of the year at the Center for Computational Quantum Physics as a distinguished research scientist. In 2012 he graduated magna cum laude from Cornell University with a B. for help and tutorials visit: github. Open to admins and anyone with cluster credentials, this wiki aims to document computing resources, outline policies, suggest best practices, and address frequently asked questions at the Flatiron Institute. I have my doctoral degree from Princeton University from 2019, and bachelor’s degree from the University of Science and Technology of China from 2013. My long-term goal is to understand the formation of planetary systems from first principles. Prior to joining, he received his Ph. Scientific Computing Core Director, Flatiron Institute Email Ian Fisk. He has a Ph. I joined the Flatiron Institute in 2018 as a Senior Research Scientist in the Center for Computational Astrophysics, with a joint appointment at Stony Brook University. While there, he worked mostly on cosmology and machine learning, collaborating with astrophysicists and mathematicians in both CCA and CCM. It is part of the Flatiron Institute, a network of centers for scientific research and education in New CCM is a research center that develops new mathematical methods and software for scientific data analysis and simulation. I also hold an Adjunct Research Scientist position at Columbia Astrophysics I am a Flatiron Research Fellow in the Center for Computational Quantum Physics at the Flatiron Institute. My research is focused on strongly correlated electrons in model systems as well as in quantum materials. All networks are available as gzipped, tab-delimited text files. IDEA scholars are distinguished scientists with strong scientific overlap with one or more of the Flatiron Centers and a particular interest in increasing diversity and improving equity and inclusion, who are invited to spend extended visits at the Flatiron Institute. Paulson School of Engineering and Applied Sciences where I worked with Cengiz Pehlevan. It is a project of the Center for Computational Mathematics at the Flatiron Research Fellow, Genomics, CCB, Flatiron Institute. Features: poster creation, participant management, . [See my notes on matrix product states and DMRG. 8 watching. A meeting is an event that defines an agenda with multiple talks. in Physics from Cornell 1Center for Computational Quantum Physics, Flatiron Institute, Simons Foundation 08/31/2023. Watchers. Ore Gottlieb joined the Center for Computational Astrophysics (CCA) as a Flatiron Research Fellow in August 2023. DeepSEA analysis DeepSEA is a deep learning framework that predicts genomic variant effects on a wide range of regulatory features with single nucleotide sensitivity: transcription factors binding, DNase I hypersensitive sites, and histone marks in multiple human cell types. fellow at Princeton University. You can find out more by browsing this website or looking at my CV. My main research tool is numerical simulation, which uses the most advanced I am a Research Scientist at the Center for Computational Quantum Physics (CCQ) at the Flatiron Institute. Flatiron Research Fellow, Stars and Plasma Astrophysics, CCA, Flatiron Institute Ore Gottlieb’s website Email Ore Gottlieb. in electrical engineering from Virginia Polytechnic Institute Read more The Flatiron Institute NUFFT (“FINUFFT”) library contains shared-memory parallel CPU (C++ OpenMP) and GPU (CUDA) implementations of type-1, type-2, and type-3 (for CPU only) transforms in 1D, 2D, and 3D, in both single- and double-precision arithmetic, plus Eric Thomson, Flatiron Institute, Simons Foundation; A complete list of contributors can be found here. Do not store any sensitive or critical data. Research topics at CCM include signal processing, numerical PDE, numerical analysis, fast algorithms, biophysics, Director, Center for Computational Quantum Physics, Flatiron Institute Antoine Georges’s website Email Antoine Georges. I'm a Research Fellow at the Center for Computational Mathematics of the Flatiron Institute in New York, and member the of Polymathic AI collaboration. Flatiron Research Fellow, CCQ (2019-2022) Brian Busemeyer joined the Center for Computational Quantum Physics (CCQ) in September of 2019. Flatiron Institute Binder for external users. com Flatiron CCN Software Workshop, February 2025. It contains the basic source parameters, in their final state as processed by the Gaia Data Flatiron Research Fellow, CCM, Flatiron Institute Hai earned a Ph. In 2022, I earned a PhD in Statistics from Columbia University. All rights reserved except where noted. Phil Armitage. Jazz pianist for after-party for Cooked DOC NYC premiere, chez Ettinger, Gramercy, NYC. . 682MB: 2024-06-08 03:53 UTC B. in condensed matter theory at MIT. I am furthermore a fellow to the Princeton University Society of Fellows. News SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. By default, each server has 1 (one) CPU core and 10GB of memory available for processing, but this can be configured by the Flatiron researcher in the project environment. Readme License. Currently Pat Gunn, Johannes Friedrich, and Eric Thomson are the most active contributors. / train_001-of-001. in Physics, Cornell University, 1993. Custom properties. Aizhan’s research interests lie at the intersection of cosmology and machine learning. in Engineering Physics. Contacts Email: shirleyho++flatironinstitute. setSwitchingDistance() . Fisk was the Compact Muon Solenoid (CMS) experiment’s computing coordinator at CERN from 2010 to 2013, overseeing Flatiron Institute, New York University: Thesis: Baryons, Universe and Everything Else in Between : Doctoral advisor: David Spergel: Shirley Ho is an American astrophysicist and machine learning researcher, currently at the Center for Computational Astrophysics at the Flatiron Institute, and an affiliated faculty at the Center for Data Science The mission of the Flatiron Institute is to advance scientific knowledge through computational methods, including data analysis, theory, modeling, and simulation. To find out about my research and contact details, and research of colleagues, see the Center for Computational Mathematics, Flatiron Institute, Simons Foundation, and the Numerical Analysis area. setUseSwitchingFunction(True) and force. Tensor networks are a technique to represent very high-order tensors by a contracted network of low With a new computational model, Flatiron Institute researchers have made big steps in understanding how our brains classify. TRIQS: available impurity solvers 4. theflatironinstitute. This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory This service is governed by the documentation. I am a Senior Research Scientist in the Center for Computational Mathematics (CCM) at the Flatiron Institute. It currently houses five centers, focused on computational astrophysics (CCA), biology (CCB), mathematics (CCM), neuroscience (CCN) and quantum physics (CCQ), as well as a scientific A lecture is a simple event to announce a talk. Sep 24 11am [9th fl classrm; joint seminar w/ CCQ]: Jianfeng Lu (Duke). This advance could improve efficiency in artificial neural networks. in Applied and Interdisciplinary Mathematics from the University of Michigan in 2021 and became a Postdoctoral Assistant Professor there in the fall of 2021, with Flatiron Institute 162 5th Ave. Weiguang Mao joined the Center for Computational Biology’s Genomics Group in July 2022. Flatiron Institute. I'm interested in lots of fluid dynamic phenomena, especially related to active matter, moving boundary problems, and joined the Flatiron Institute’s Center for Computational Biology in 2021. Pilar Cossio joined the Center for Computational Mathematics in April 2021 as the Research Scientist and Project Leader for Structural and Molecular Biophysics (SMB). Valentin Crépel joined the foundation in August 2022 after completion of his Ph. Before joining the Flatiron Institute, I obtained my Ph. Milky Way Cosmological Galaxy Formation Simulations Cosmological Dark Matter-Only Simulations CANDELS Semi-Analytic Forecasts. If you have difficulties setting up, contact them. in Physics, University of Science and Technology of China, 1988 Ph. in Computer Science from the Physics Lab of Ecole Normale Supérieure in 2022, and was a research scientist for the startup LightOn where I worked on developing new machine learning I am a Research Fellow in the Flatiron Institute's Center for Computational Biology reporting to the Biophysical Modeling Group. Ian Fisk came to the Simons Foundation in 2014 after working in the computing division at the Fermi National Accelerator Laboratory in Illinois since 2003. My work revolves around developing and implementing cutting-edge computational techniques to tackle the quantum Powering the work of the Flatiron Institute is a high-performance computer cluster designed, deployed and maintained by SCC. in physics and photonics under the supervision of Prof. ipynb -- now includes force. Resources . The foundation’s support of science takes two forms: We support research by making grants to individual investigators and their projects through academic institutions, and, with the launch of the Flatiron Institute in 2016, we now conduct scientific research in-house, Initiative for Computational Catalysis The Simons Foundation Initiative for Computational Catalysis is a new effort within the Flatiron Institute dedicated to the development and application of computational techniques enabling the rational Initiative for Computational Catalysis on Simons Foundation. Github. Antoine Georges is a professor of physics at the Collège de France, where he holds the chair in condensed This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine A lecture is a simple event to announce a talk. - GitHub - flatironinstitute/FMM3D: Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) In 2016 I joined the newly-founded Center for Computational Astrophysics at the Flatiron Institute (a division of the Simons Foundation) as an Associate Research Scientist. The Flatiron Institute was dedicated with a ceremony on September 6, 2017. D. Previously, Cossio was Max Planck Tandem Group Leader associated with the Flatiron Institute, 162 5th Avenue, New York, NY 10010 USA; Email: click or saiola at flatironinstitute dot org; Office: (646) 876-5963 Background picture: ACT, John Ward. In order to leverage the vast collections of raw, noisy genomic data, they must be integrated, summarized, and presented in a biologically informative manner. My research focuses on understanding fluid-structure interactions in complex and active fluids. My research focuses on the development of robust, high-order, and scalable numerical algorithms for problems in computational quantum physics. Read More HumanBase is actively developed by the Genomics group at the Flatiron Institute. Collections. Forks. It is a project of the Center for Computational Mathematics at the I am currently an Associate Research Scientist in the Computational Center for Astrophysics, which is part of the Flatiron Institute supported by the Simons Foundation in New York. I'm a Research Scientist in the Biophysical Modeling Group, part of the Center for Computational Biology at the Flatiron Institute. Explore their GitHub profile and repositories, including CaImAn, deepblast, spack, nixpack, and more. Sign in with Google Starting August 2025, I will be an assistant Professor in the Astronomy department of Radboud University in Nijmegen, the Netherlands. I'm an Associate Research Scientist in the Center for Computational Mathematics and the Center for Computational Biology at the Flatiron Institute interested in numerical analysis and scientific computing. I am currently a Research Fellow at the CCA of the Flatiron Institute and a Lyman Spitzer, Jr. I am broadly interested in developing robust and reliable methods for data analysis and understanding their properties. ] Full Network: the network is fully connected [entrez gene id 1][entrez gene id 2][posterior prob. He is also Chancellor Professor of Physics at the College of William & Mary. Aizhan Akhmetzhanova joined the Center for Computational Astrophysics (CCA) as a Predoctoral Fellow in Spring 2025. Design: Matthew Fishman joined the Center for Computational Quantum Physics at the Flatiron Institute in September, 2018. rst for full Before joining aQa, I was a research fellow at the Center of Computational Quantum Physics of the Flatiron Institute in New York. Welcome! Here is my CV, a bio, and below is some news. It comprises 91,000 cores, 300 GPUs, and 34 petabytes of raw storage, with plans to add 20,000 cores in the near future. She uses computational and observational approaches to study how planetary systems form and evolve. Sep 11: Manas talking about "box codes" (volume FMMs); general discussion. I am an Associate Research Scientist, joint between the Center for Computational Mathematics and the Center for Computational Quantum Physics at the Flatiron Institute, Simons Foundation. Currently he focuses on developing Reinventing a Beaux Arts building as a think tank for advanced computational science research Woven into the urban fabric of Manhattan’s Flatiron District, with its historic storefronts, lofts, and residential buildings, is the campus of a world Following the success of the 1st Athena++ Workshop in 2019, we are happy to announce the 2nd Athena++ Workshop to be held on May 8-12, 2023, hosted by the Center for Computational Astrophysics, Flatiron Institute. org. FermiSee: phenomenology & visualization Flatiron Institute Data Exploration and Comparison Hub. I am part of a large and growing research effort in the area of machine learning, both within my own center and QUASR database by Andrew Giuliani (Flatiron Institute), based on algorithms developed with Florian Wechsung (NYU), Georg Stadler (NYU), Antoine Cerfon (NYU), and Matt Landreman (U Maryland), and described in . [1] [2] Barnett is also a jazz and funk musician. Interns will spend the summer living and working in New York City. Simons The Flatiron Institute is an American internal research division of the Simons Foundation, launched in 2016. in Materials Science from ETH Zurich in Switzerland, where I was advised by Claude Ederer. Magland, Ludvig af Klinteberg, Yu-hsuan "Melody" Shih, Libin Lu, Joakim Andén, Marco Barbone, Robert Blackwell, and Martin Reinecke; see docs/ackn. Due to popular demand for the January 2025 workshop, the Flatiron Center for Computational Neuroscience has added a second session of its workshop on using open source packages to analyze neural data, happening in February 2025!This workshop is intended for neuroscientists who originally applied for the January I am a Research Fellow in Computational Mathematics at the Flatiron Institute, a part of the Simons Foundation. Jason Kaye. Functional gene networks. Maciej Lewenstein (ICFO – The Institute of Flatiron Institute, Simons Foundation The main focus of my research is adaptive, high-order, parallel methods for solution of partial differential equations. It is extremely fast (typically achieving \(10^6\) to \(10^8\) points per second on a CPU, Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY 2017–2018 Professor. Her research focuses on structural and molecular biophysics, particularly the modeling and analysis of experimental data and simulations to understand the molecular mechanisms of key biological processes. CV Simons Foundation Presidential Lectures are free public colloquia centered on four main themes: Biology, Physics, Mathematics and Computer Science, and Neuroscience and Autism Science. This project was developed in part at the 2023 Sun-as-a-Star Workshop, hosted by the Center for Computational Astrophysics of the Flatiron Institute in New York City. Hello! I'm Lehman, a software engineer at the Flatiron Institute's Scientific Computing Core. I am working on several projects where radiative transfer plays an important role. in biophysics from the University of Southern Senior Research Scientist, CCM, Flatiron Institute. The mission of the Flatiron Institute is to advance scientific research through computational methods, including data analysis, theory, modeling, and simulation. Primary research interests: galaxy formation, high-redshift galaxies, submillimeter galaxies, active galactic nuclei, radiative transfer, dust, (magneto)hydrodynamics, spectral However, a new study from the Flatiron Institute and collaborators suggests that imperfect analysis methods used to detect the activity — called the 3. under Daniel Eisenstein at the Center for Astrophysics | Harvard & Smithsonian. AGORA FIRE Gaia DR2 Gaia DR3 Illustris IllustrisTNG EAGLE CAMELS CANDELS SC-SAM SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. 75MB: 2024-06-08 03:53 UTC: val_001-of-001. Catalogs. Flatiron Institute, rusty cluster GPU node (site=FI) Targets Default (x86_64) -- do not specify target variable; IBM power9 (target=power9) A general note about expanding the platform support: targets should contain settings that are specific to a compiler/hardware architecture, whereas sites should contain settings that are specific to a HPC Andrew Millis is co-director of the Center for Computational Quantum Physics at the Flatiron Institute and professor of physics at Columbia University. Navigator by Jeff Soules (Flatiron Institute) Machine Learning at the Flatiron Institute Machine learning has become an indispensable tool for computational science, and it is an active and growing area of research throughout the Flatiron Institute. Research Interests: Integral equation methods for the solution of PDEs of mathematical physics ; Sciware is a Flatiron-wide activity to share and build scientific software development and computing skills in a variety of areas. They work on projects such as NeMoS, plenoptic, Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type Lawrence Saul. The Simons Foundation Initiative for Computational Catalysis is a new effort within the Flatiron Institute dedicated to the development and application of computational techniques enabling the rational design of more efficient and more affordable catalysts. Google Colab notebooks for lecture 3: openmm_lj_chain-SMH. Features: timetable, minutes, poster creation, participants management, . Massive halos with black hole growth. We actively promote collaboration across physical and intellectual barriers through a pioneering grantmaking approach and are committed to the sharing of knowledge Predoctoral Fellow, Cosmology, CCA, Flatiron Institute. The recruiting team’s top-notch communication, organization, and event planning also fostered our camaraderie, and our outings across Manhattan Co-Director, Initiative for Computational Catalysis, Flatiron Institute Email Angel Rubio. My main research projects were on high-performance Flatiron Institute Nonuniform Fast Fourier Transform library: FINUFFT Python wrapper: Principal author Alex H. He has composed the music for a number of films [3] by his wife, director Liz Canner. (2017) simulated to z = 1. Barnett (abarnett@flatironinstitute. 5 keV line — likely produced a phantom signal. Special thanks to the following people Our Flatiron Institute was opened in 2016 and conducts scientific research in-house, supporting teams of top computational scientists. Spike sorting software being developed at Flatiron Institute, based on JRCLUST (Janelia Rocket Cluster) Resources. This suite comprises 4 massive galaxies from Anglés-Alcázar et al. Sep 4: General show and tell; Libin Lu on SIMD vectorization. in Computational Biology from the University Xi Chen joined the Flatiron Institute’s Center for Computational Biology in 2016 in the genomics group. Sciware is a Flatiron-wide activity to share and build scientific software development and computing skills in a variety of areas. Chancellor Professor Department of Physics College of William & Mary. Apache-2. In SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. hdf5: 12. This workshop is for grad students and postdocs who are systems neuroscientists Flatiron Institute hosts free public colloquia on biology, physics, mathematics, computer science, and neuroscience and autism science. In 2018 he received a PhD in physics from the California Institute of Technology, where he developed tensor network algorithms under SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. 200 3:30 PM → 4:30 PM "Self-Supervised Learning, Energy-based Methods, and World Models" | Speaker: Yann LeCun Ingrid Daubechies Auditorium/2-IDA (162 5th Avenue) Ingrid Daubechies Auditorium/2-IDA Senior Research Scientist/Group Leader, CCQ, Flatiron Institute Shiwei Zhang’s website Email Shiwei Zhang. from Harvard University in 2023 Spring, advised by Professor Boaz Barak. FINUFFT is a library to compute efficiently the three most common types of nonuniform fast Fourier transform (NUFFT) to a specified precision, in one, two, or three dimensions, either on a multi-core shared-memory machine, or on a GPU. View My GitHub Profile. , with known edges set to Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) Flatiron Institute Nonuniform Fast Fourier Transform¶. org), main co-developers Jeremy F. He is the managing director of the Max Planck Institute for the Structure and Dynamics of Matter and the director of its theory SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. Before that Aug 8-10: Computational Cryo EM Summer Workshop @ Flatiron Institute, including Saturday am software show-and-tell. To find out about my research and contact details, and research of colleagues, see the Center for Computational Mathematics, Flatiron Institute, Simons Foundation, and the 1 Center for Computational Biology, Flatiron Institute - Simons Foundation, New York, United States of America 2 Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America 3 Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America 4 The Flatiron Research Fellow, CCQ, Flatiron Institute. Flatiron Institute Nonuniform Fast Fourier Transform¶. , 6th floor New York, NY 10010 USA. edX, Open edX and their respective logos are registered trademarks of edX Inc. name size time. He currently serves as Managing Director of the Flatiron Institute. We intend to create solid packages that can be relied and built upon, rather than chasing cutting-edge research. Shidong Jiang joined the Center for Computational Mathematics in August 2021 as a Senior Research Scientist. At Flatiron, Kipp is developing signal processing tools for I am a Flatiron Research Fellow in the Center for Computational Astrophysics at the Flatiron Institute. He is passionate about strongly correlated quantum many-body Flatiron Institute Data Exploration and Comparison Hub. I am a research fellow in the Center for Computational Mathematics at the Flatiron Institute, where I am a member of the ML@CCM group and ML@FI. She is broadly interested in developing and leveraging machine learning tools and Come work with us on an open source neuroscience software package in Manhattan for a summer! The NeuroRSE team at the Flatiron Institute Center for Computational Neuroscience is looking for paid interns for Summer 2024. Prior to joining the Flatiron Institute, Li was a postdoctoral researcher in cosmology with joint appointments at the University of California, Berkeley, and the University of Tokyo. 2017 Department of Mathematics, Dartmouth College, NH Senior Research Scientist. Shiwei Zhang is a Senior Research Scientist/Group Leader at the Center for Computational Quantum Physics. Science requires a diversity of perspectives. com/TRIQS/FermiSee. SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. Flatiron Institute MD Course. Stars. The Flatiron Institute advances scientific research in astrophysics, biology and quantum physics through computational methods, including data analysis, modeling and simulation. Jiayin Dong is a Flatiron Research Fellow at the Center for Computational Astrophysics. As of June 2023, I'm a Flatiron Research Fellow in the Center for Computational Mathematics at the Flatiron Institute, working with the Structural and Molecular Biophysics Group led by Pilar Cossio and Sonya Hanson. Email: chayward [at] flatironinstitute [dot] org Mailing address: Flatiron Institute 162 5th Ave. By guaranteeing reproducibility, we aim to improve numerical experiments as one of the most powerful tools in formulating theories of galaxy formation. edu; Twitter; Github Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) Bulk access through Flatiron Institute; Preset field selections: Xp spectra and astrophysical parameters; RVS spectra and astrophysical parameters; gaia_source: This table has an entry for every Gaia observed source as published with this data release. High-order methods methods and complex geometries Optimization of complex systems Google Scholar. Before that, I received my Ph. S. // About me. Flatiron Institute Contact Details Office: 411 162 5th Avenue New York, NY - 10012 Email: (m)lastname (at) (institutename). Our goal is to create an environment where everyone can discuss technologies, tools, and tricks that make their research process more efficient, across all experience levels, language and technology choices, and scientific disciplines. Oct 2, 2020. I earned my PhD in condensed matter physics from Peking University where I was advised by Chao Tang and Yuhai Tu at the Center for Quantitative Biology. Warning: JupyterHub seems to be served over an unsecured HTTP connection. View the applications here. Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) SpikeForest is a website and open source computing framework for evaluating and comparing spike sorting algorithms for neurophysiology data analysis. Flatiron Institute Data Exploration and Comparison Hub. This is a one-of-a-kind, inter Flatiron Institute Data Exploration and Comparison Hub (FlatHUB) is a science platform for diverse types of data, that allows users to explore and compare data from different simulations Learn how to use pynapple and NeMoS to analyze neural data at the Flatiron Institute in New York City. hdf5: 1. Features: timetable, minutes, poster creation, The Flatiron Institute, located in the heart of New York City, also hosts computational centers for astrophysics, biology, quantum physics, and neuroscience. CCN’s mission is to develop DeepFRI is a structure-based protein function prediction (and functional residue identification) method using Graph Convolutional Networks with Language Model features. Sc. CCQ is a research center that aims to solve the quantum many-body problem and apply it to materials and molecules. She has a B. 28 stars. I received my PhD in Summer 2022 from the Courant Institute of Mathematical Sciences working with Leif Ristroph and Michael Shelley. , New York, NY 10010. Nov 2018. A conference is a complex event with features to manage the whole life cycle of a conference. Today we are proud to introduce the STARFORGE project, a new initiative to perform the most realistic, high-resolution simulations of star formation to tackle its most fundamental questions. ]. Jiang was previously a Professor of Mathematical Sciences at the New Jersey Institute of Technology. Welcome! This is the documentation for Selene, a PyTorch-based deep learning library for sequence-level data. I am also interested in method development, particularly in renormalization group based approaches with real-frequency resolution. org Phone: +1 (646) 8765977 . Visiting scholars, guests, interns, and external collaborators: Your manager or collaborator can create an account for you using FIDO. Acknowledgements. In 2022, I defended my joint Ph. Specifically, it performs computational mutation scanning by accessing the predicted regulatory effect of I was postdoc fellow at Harvard University (2022/09 - 2023/12), and research fellow at Center for Computational Quantum physics at Flatiron Institute (2019/09 - 2022/09). He earned his Ph. It is part of the Flatiron Institute, a network of centers for basic science and mathematics Flatiron Institute is a research organization that supports scientists and engineers in New York City. Alex Barnett (born 1972) is a senior mathematician at the Flatiron Institute and professor of mathematics at Dartmouth College. ahampel@flatironinstitute. Selene documentation¶. My research focuses on theoretical and computational studies of planet formation and accretion disk processes, with the primary goal of understanding the origins of the Solar System and Networks: tissue-specific gene networks (GIANT) Modules: functional module detection (large gene lists) Sei: chromatin effects of variants In silico mutagenesis: discover regulatory features of sequences ExPecto SC: cell-type-specific gene expression effects for mutations ExPecto: tissue-specific gene expression effects of variants GWAS: GWAS reprioritization (NetWAS) HPC, Parallel Algorithms, Scientific Computing, Distributed Sorting. org Outline 1. ckbrx zher ulxhon zwwc pgxvws ihda otb ajqw veyrw lfoj